In the Output preset, "Site Name" is used as the root folder name. To remove the default -ditamap from the root folder name, you can specify your custom site name.

Hi @timelincoln7648 Please refer to the "Author Markdown documents from the Web Editor" section in the User Guide documentation.

The option to skip replacing the file during upload is currently not available, as is the Assets UI behavior. Please submit a request through a support ticket, and the concerned team will be able to confirm if it is on the roadmap.

This community forum is specific for AEM Guides solution. You can post this question in the AEM Sites forum - Using Client-Side Libraries | AEM Community Discussion 

Could you please check if you are able to use the package manager console to package the content.  or please share the error screenshots and error logs to the above email ID to investigate this issue further. 

Hi @ChrisDNYC   Can you confirm the Guides version you are using and also, please share a sample content that can be used to reproduce this issue. email: alakshminara@adobe.com

Please check your folder profiles and add the templates if they are not included under PDF templates section. Folder profiles -> your profile -> Authoring templates -> PDF templates

Thanks for reporting this! We have logged a bug for this issue.  DXML-10566 – You can track the request through this JIRA ID.

Could you please confirm the Guides version in which you are experiencing this issue?

Guides upgrade will happen automatically when the new release of AEM image (the image that has not yet been made available to many customers) is updated.