Move your javascript files, trust functions or whatever you need to:
C:\Users\JoeUser\AppData\Roaming\Adobe\Acrobat\Privileged\11.0\JavaScripts
Most likely you will have to create a new folder after "Privleged" titled "11.0"
Then create a folder after "11.0" titled "JavaScripts"
Move your .js files into the newly created JavaScripts folder