Now I feel **bleep**. I found that I had the path listed in two sub projects. The first one that would be built, didn't have the path so it would delete the tree and then my custom workflow would be added. Problem solved. Remove the filter that was deleting the tree and things work as expected.

<?xml version="1.0" encoding="UTF-8"?> <workspaceFilter version="1.0"> <filter root="/conf/mysite" mode="merge"/> <filter root="/content/mysite" mode="merge"/> <filter root="/content/dam/mysite/asset.jpg" mode="merge"/> <filter root="/content/experience-fragments/mysite" mode="merge"/> <filter root=...

I'm trying to include a custom workflow and launcher in my maven package. I've created an archetype using the aem-project-archetype 27 settings for AEM 6.5. I have created a custom workflow that has one step which is a process step. I have also added a launcher for this workflow as well. I then crea...