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As of now, there is no provision in Adobe Target interface that can exclude libraries from the exported XF (experience fragment). The whole purpose behind this uneditable HTML is itself meant to not be changed in AT. Thus, you need to remove the clientlib libraries before publishing the XF in AEM.
Although, if it has been about any other style or UI update, you could have the option to create a separate custom code in AT w.r.t the XF HTML elements in order to change them.
Hope this helps you.
Best regards