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"do you get an api with LiveCycle that is different than the one you get with Adobe Pro?"

I don't think you get an public API form Acrobat. You do get an API when using the Reader Extension service in LiveCycle.

"Can I automate that procedure by referencing the api in a .Net project?"

You would most likely use the Web service interface to interact with Reader Extesion.

See  the following links for more details:

http://livedocs.adobe.com/livecycle/8.2/programLC/programmer/help/000275.html

http://livedocs.adobe.com/livecycle/8.2/programLC/programmer/help/000414.html

Jasmin