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New install does not allow write to repository

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Level 2
We are going from the evaluation copy to our licensed test environment.  We have Microsoft Server 2008 R2, WebLogic and SQL as our environment.Everything looks like it should however I cannot deploy, undeploy or create a new application from Work bench.   I have tried the solution offered in FAQs for Workbench for the RepositoryProviderService, that did not resolve my problem.  The error received when trying to create a new application was "Failed to create application, Please check if application ......"  It seems that I can work in workbench up to the point of deployment. then I get a cannot serialize module for existing applications.  I would delete the application and start from scratch but I am not sure how to do that either.  Any suggestions?
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Correction I can delete the local copy I can check in and check out assets however I cannot undeploy my application it says it is not serializable.

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Further Update - We use Webshere not Web logic and we run Workbench from a Windows 7 platform