The Eclipse Plug-in works best with AEM 6.3. I found previous versions were buggy - for 6.2 articles - we used Maven Archetype 10, Eclipse, and compiled using the command line.
For those reading this - use Lazybones to create a 6.3 project - see:
https://helpx.adobe.com/experience-manager/using/aem_lazybones.html
Now for 6.2 - use Maven Archetype 10 as discussed here:
https://helpx.adobe.com/experience-manager/using/first-arch10.html