Only correction needed in <Embed-Dependency> entry.
It has explicit mention of artifactId "microsoft-graph" alone to be included/embedded as part of core bundle.
Please use "*" which includes/embed all of its transitive(compile and/or runtime) dependencies along with core bundle.
<Embed-Dependency>*</Embed-Dependency> // This will include all maven dependencies as available in parent pom.xml/core pom within <dependencies> entry.
If you still face issues in few dependencies resolving/ NoClassDefFound Error at the time of execution/testing the functionality even when the bundle is active, please update this thread with respective dependency details.