Dear Pratik,
Assuming the new file uploaded recently has the entire database rather than just ammendments. if true, have you checked(See the screen grab) the below option while uploading?
If not, please upload the final file with classification details to upload it again with the below option enabled.

It should solve everything.
Wait for a day or two so that the classifications reflects in Adobe Analytics.
If you still face problem, kindly reach Adobe Customer Care.
Thank You!
Arun